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MCP Registry/breedsim-mcp
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breedsim-mcp

Breeding-scheme simulation via AlphaSimR. Needs R, AlphaSimR and libtirpc-dev on the host.

Use with clientMarkdown

Install and compare this MCP server

Use this profile to copy client config, check auth requirements, review tools and resources, and compare related MCP servers before adding it to an AI client.

Install
uvx breedsim-mcp
Clients
Claude, Cursor, VS Code, Codex
Transport
STDIO
Auth
Not captured
Capabilities
0 tools, 0 resources, 0 prompts
Related
phylokit-mcp, ldraw-mcp, plantcv-mcp

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InstallAuthTools & ResourcesOverview

Install

Connection

Transport
STDIO
Command
uvx breedsim-mcp
Environment
{ "OMP_NUM_THREADS": "YOUR_VALUE_HERE" }

Claude Desktop

Add this server entry to the mcpServers object in your Claude Desktop config, then restart the app.

{
  "mcpServers": {
    "io-github-musharna-breedsim-mcp": {
      "command": "uvx",
      "args": [
        "breedsim-mcp"
      ],
      "env": {
        "OMP_NUM_THREADS": "YOUR_VALUE_HERE"
      }
    }
  }
}

Config location

macOS
~/Library/Application Support/Claude/claude_desktop_config.json
Windows
%APPDATA%\Claude\claude_desktop_config.json

Auth

Package transport

No remote HTTP endpoint is advertised. Use the package or stdio setup shown in Install.

Tools & Resources

Tools
0
Resources
0
Prompts
0
No public tools, resources, or prompts captured yet. Use Auth when this server requires credentials.

Tools

No tools captured yet.

Resources

No resources captured yet.

Prompts

No prompts captured yet.

Questions

What is breedsim-mcp?+

breedsim-mcp is an MCP server for Breeding-scheme simulation via AlphaSimR. Needs R, AlphaSimR and libtirpc-dev on the host.. It supports STDIO transport.

How do I install breedsim-mcp?+

Use the generated config in Install. This server runs with uvx breedsim-mcp; add any required environment variables before starting your client.

How do I add breedsim-mcp to Claude Desktop?+

Choose the Claude Desktop tab in Install and copy the config for uvx breedsim-mcp. Add required environment variables before starting Claude Desktop.

How do I add breedsim-mcp to Claude Code?+

Choose the Claude Code tab in Install and copy the config for uvx breedsim-mcp. Add required environment variables before starting Claude Code.

How do I use breedsim-mcp with Codex?+

Choose the Codex tab in Install and copy the config for uvx breedsim-mcp. Add required environment variables before starting Codex.

How do I add breedsim-mcp to Cursor or VS Code?+

Choose the Cursor or VS Code tab in Install and copy the config for uvx breedsim-mcp. Add required environment variables before starting Cursor or VS Code.

What endpoint and transport does breedsim-mcp use?+

breedsim-mcp uses STDIO transport. Use the package or command config in Install.

What tools and resources does breedsim-mcp expose?+

breedsim-mcp inventory is listed when the MCP endpoint exposes tools, resources, or prompts. Some servers require auth first.

Does breedsim-mcp require authentication?+

breedsim-mcp does not advertise a verified auth requirement. If discovery fails, it may still need provider login, an API key, a bearer token, or a session header.

Related MCPs

phylokit-mcpPhylogenetic inference via IQ-TREE 2 — never returns a topology without its supportldraw-mcpRender LDraw/LEGO models to images with real part geometry via headless Blender + ImportLDrawplantcv-mcpPlant phenotyping via PlantCV — returns traits plus the segmentation overlay they came fromjobdSelf-hostable GPU-aware job broker: submit, route by VRAM, babysit jobs across machines via MCP.Data AggregatorFind & fetch research datasets across 17 archives, omics registries, and literature sources.Plant GenomicsPlant genomics MCP — 50 tools across 23 backends with cross-source synthesis.

Profile notes

  • Package: Pypi breedsim-mcp v0.4.1
  • Environment variable: OMP_NUM_THREADS

Packages

PackageRegistryVersionInputs
breedsim-mcp

stdio

pypi0.4.1

Env: OMP_NUM_THREADS

Details

Version
0.4.1
Repository
https://github.com/musharna/breedsim-mcp
Website
https://github.com/musharna/breedsim-mcp
Updated
Aug 2, 2026