Link compounds to protein targets, rank bioactivity, and look up drug mechanisms and indications.
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npx -y @cyanheads/chembl-mcp-server{
"CANVAS_PROVIDER_TYPE": "none",
"CHEMBL_API_BASE_URL": "https://www.ebi.ac.uk/chembl/api/data",
"CHEMBL_REQUEST_TIMEOUT_MS": "30000",
"CHEMBL_MAX_PAGE_SIZE": "1000",
"CHEMBL_DEFAULT_LIMIT": "25",
"CHEMBL_DATAFRAME_DROP_ENABLED": "false",
"MCP_LOG_LEVEL": "info",
"MCP_HTTP_HOST": "127.0.0.1",
"MCP_HTTP_PORT": "3010",
"MCP_HTTP_ENDPOINT_PATH": "/mcp",
"MCP_AUTH_MODE": "none"
}Add this server entry to the mcpServers object in your Claude Desktop config, then restart the app.
{
"mcpServers": {
"io-github-cyanheads-chembl-mcp-server": {
"command": "npx",
"args": [
"-y",
"@cyanheads/chembl-mcp-server"
],
"env": {
"CANVAS_PROVIDER_TYPE": "none",
"CHEMBL_API_BASE_URL": "https://www.ebi.ac.uk/chembl/api/data",
"CHEMBL_REQUEST_TIMEOUT_MS": "30000",
"CHEMBL_MAX_PAGE_SIZE": "1000",
"CHEMBL_DEFAULT_LIMIT": "25",
"CHEMBL_DATAFRAME_DROP_ENABLED": "false",
"MCP_LOG_LEVEL": "info",
"MCP_HTTP_HOST": "127.0.0.1",
"MCP_HTTP_PORT": "3010",
"MCP_HTTP_ENDPOINT_PATH": "/mcp",
"MCP_AUTH_MODE": "none"
}
}
}
}~/Library/Application Support/Claude/claude_desktop_config.json%APPDATA%\Claude\claude_desktop_config.jsonNo remote HTTP endpoint is advertised. Use the package or stdio setup shown in Install.
chembl-mcp-server is an MCP server for Link compounds to protein targets, rank bioactivity, and look up drug mechanisms and indications.. It supports STDIO, HTTP transport.
Use the generated config in Install. This server runs with npx -y @cyanheads/chembl-mcp-server; add any required environment variables before starting your client.
Choose the Claude Desktop tab in Install and copy the config for npx -y @cyanheads/chembl-mcp-server. Add required environment variables before starting Claude Desktop.
Choose the Claude Code tab in Install and copy the config for npx -y @cyanheads/chembl-mcp-server. Add required environment variables before starting Claude Code.
Choose the Codex tab in Install and copy the config for npx -y @cyanheads/chembl-mcp-server. Add required environment variables before starting Codex.
Choose the Cursor or VS Code tab in Install and copy the config for npx -y @cyanheads/chembl-mcp-server. Add required environment variables before starting Cursor or VS Code.
chembl-mcp-server uses STDIO, HTTP transport. Use the package or command config in Install.
chembl-mcp-server inventory is listed when the MCP endpoint exposes tools, resources, or prompts. Some servers require auth first.
chembl-mcp-server does not advertise a verified auth requirement. If discovery fails, it may still need provider login, an API key, a bearer token, or a session header.
| Package | Registry | Version | Inputs |
|---|---|---|---|
@cyanheads/chembl-mcp-serverstdio | npm | 0.2.0 | Env: CANVAS_PROVIDER_TYPE Env: CHEMBL_API_BASE_URL Env: CHEMBL_REQUEST_TIMEOUT_MS Env: CHEMBL_MAX_PAGE_SIZE Env: CHEMBL_DEFAULT_LIMIT Env: CHEMBL_DATAFRAME_DROP_ENABLED Env: MCP_LOG_LEVEL |